Models
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MCell: A Monte Carlo Simulator of Cellular Microphysiology
Investigation of neurotransmitter diffusion in three-dimensional reconstructions of hippocampal neuropil

Nanoconnectomic upper bound on the variability of synaptic plasticity

Long-term potentiation expands information content of hippocampal dentate gyrus synapses

Nanoscale co-organization and co-activation of AMPAR, NMDAR and mGluR at the synapse

Multiscale modeling of presynaptic dynamics from molecular to mesoscale

A spatial model of autophosphorylation of CaMKII in a glutamatergic spine suggests a network-driven kinetic mechanism for bistable changes in synaptic strength