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MCell: A Monte Carlo Simulator of Cellular Microphysiology

MCell Workshop 1999 Table of Contents

Overview of MCell

Introduction to MCell Model Description Language (MDL)

Anatomy of a Well Structured MDL File

Modular Design of MDL Include Files

Random Number Generator

Brownian Dynamics Random Walk Algorithm

Closed, Box-Shaped Surfaces and Ligand Sampling

Polygon Mesh Surfaces

Raytracing/Raymarching and Optimizations